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2019 Vol.32, Issue 6 Preview Page

Research Article

Comparative Analysis of Chloroplast Genome of Dysphania ambrosioides (L.) Mosyakin & Clemants Understanding Phylogenetic Relationship in Genus Dysphania R. Br.
Yongsung Kim14
,
Jongsun Park25
,
Youngjae Chung3*
1Team Leader, InfoBoss Co., Ltd., Seoul 06088, Korea
2CEO, InfoBoss Co., Ltd., Seoul 06088, Korea
3Professor, Department of Biology, Shingyeong University, Seoul 06088, Korea
4Team Leader, InfoBoss Research Center, Seoul 06088, Korea
5CEO, InfoBoss Research Center, Seoul 06088, Korea
* Corresponding Author
31 December 2019. pp. 644-668
PDF XML Citation
Abstract

Dysphania ambrosioides (L.) Mosyakin & Clemants which belongs to Chenopodiaceae/Amaranthaceae sensu in APG system has been known as a useful plant in various fields as well as an invasive species spreading all over the world. To understand its phylogenetic relationship with neighbour species, we completed chloroplast genome of D. ambrosioides collected in Korea. Its length is 151,689 bp consisting of four sub-regions: 83,421 bp of large single copy (LSC) and 18,062 bp of small single copy (SSC) regions are separated by 25,103 bp of inverted repeat (IR) regions. 128 genes (84 protein-coding genes, eight rRNAs, and 36 tRNAs) were annotated. The overall GC content of the chloroplast genome is 36.9% and those in the LSC, SSC and IR regions are 34.9%, 30.3%, and 42.7%, respectively. Distribution of simple sequence repeats are similar to those of the other two Dysphania chloroplasts; however, different features can be utilized for population genetics. Nucleotide diversity of Dysphania chloroplast genomes 18 genes including two ribosomal RNAs contains high nucleotide diversity peaks, which may be genus or species-specific manner. Phylogenetic tree presents that D. ambrosioides occupied a basal position in genus Dysphania and phylogenetic relation of tribe level is presented clearly with complete chloroplast genomes.

Keywords
Comparative analysis
Dysphania ambrosioides
Chloroplast
Nucleotide diversity
Phylogenetic analysis
Simple sequence repeat
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Information
  • Publisher :The Plant Resources Society of Korea
  • Publisher(Ko) :한국자원식물학회
  • Journal Title :Korean Journal of Plant Resources
  • Journal Title(Ko) :한국자원식물학회지
  • Volume : 32
  • No :6
  • Pages :644-668
  • Received Date : 2019-09-30
  • Revised Date : 2019-10-29
  • Accepted Date : 2019-11-14
  • DOI :https://doi.org/10.7732/kjpr.2019.32.6.644
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