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2019 Vol.32, Issue 2 Preview Page

Research Article

Construction of Database System on Amylose and Protein Contents Distribution in Rice Germplasm Based on NIRS Data

벼 유전자원의 아밀로스 및 단백질 성분 함량 분포에 관한 자원정보 구축

Sejong Oh1
,
Yu Mi Choi2
,
Myung Chul Lee1
,
Sukyeung Lee2
,
Hyemyeong Yoon2
,
Muhammad Rauf3
,
Byungsoo Chae4*
오 세종1
,
최 유미2
,
이 명철1
,
이 수경2
,
윤 혜명2
,
Rauf Muhammad3
,
채 병수4*
1Senior Researcher, National Agrobiodiversity Center, National Institute of Agricultural Sciences, RDA, Jeonju 54874, Korea
2Researcher, National Agrobiodiversity Center, National Institute of Agricultural Sciences, RDA, Jeonju 54874, Korea
3Post-doc, National Agrobiodiversity Center, National Institute of Agricultural Sciences, RDA, Jeonju 54874, Korea
4Master’s Degree Researcher, National Agrobiodiversity Center, National Institute of Agricultural Sciences, RDA, Jeonju 54874, Korea
1농촌진흥청 국립농업과학원 농업유전자원센터, 연구관
2농촌진흥청 국립농업과학원 농업유전자원센터, 연구사
3농촌진흥청 국립농업과학원 농업유전자원센터, 박사후전문연구원
4농촌진흥청 국립농업과학원 농업유전자원센터, 석사후전문연구원
* Corresponding Author
30 April 2019. pp. 124-143
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Abstract

This study was carried out to build a database system for amylose and protein contents of rice germplasm based on NIRS (Near-Infrared Reflectance Spectroscopy) analysis data. The average waxy type amylose contents was 8.7% in landrace, variety and weed type, whereas 10.3% in breeding line. In common rice, the average amylose contents was 22.3% for landrace, 22.7% for variety, 23.6% for weed type and 24.2% for breeding line. Waxy type resources comprised of 5% of the total germplasm collections, whereas low, intermediate and high amylose content resources share 5.5%, 20.5% and 69.0% of total germplasm collections, respectively. The average percent of protein contents was 8.2 for landrace, 8.0 for variety, and 7.9 for weed type and breeding line. The average Variability Index Value was 0.62 in waxy rice, 0.80 in common rice, and 0.51 in protein contents. The accession ratio in arbitrary ranges of landrace was 0.45 in amylose contents ranging from 6.4 to 8.7%, and 0.26 in protein ranging from 7.3 to 8.2%. In the variety, it was 0.32 in amylose ranging from 20.1 to 22.7%, and 0.51 in protein ranging from 6.1 to 8.3%. And also, weed type was 0.67 in amylose ranging from 6.6 to 9.7%, and 0.33 in protein ranging from 7.0 to 7.9%, whereas, in breeding line it was 0.47 in amylose ranging from 10.0 to 12.0%, and 0.26 in protein ranging from 7.0 to 7.9%. These results could be helpful to build database programming system for germplasm management.

Keywords
Amylose
Database
NIRS (Near-Infrared Reflectance Spectroscopy)
Protein
Rice germplasm
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Information
  • Publisher :The Plant Resources Society of Korea
  • Publisher(Ko) :한국자원식물학회
  • Journal Title :Korean Journal of Plant Resources
  • Journal Title(Ko) :한국자원식물학회지
  • Volume : 32
  • No :2
  • Pages :124-143
  • Received Date : 2019-02-26
  • Revised Date : 2019-03-20
  • Accepted Date : 2019-03-21
  • DOI :https://doi.org/10.7732/kjpr.2019.32.2.124
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