SNP Markers Useful for the Selection of Yellow-fleshed Peach Cultivar

Se Hee Kim; Jung-hyun Kwon; Kang Hee Cho; Il Sheob Shin; Ji Hae Jun; Sang-Yun Cho

doi:10.7732/kjpr.2021.34.5.443

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2021 Vol.34, Issue 5 Preview Page Next Page

Research Article

SNP Markers Useful for the Selection of Yellow-fleshed Peach Cultivar 황육계 복숭아 품종 선발용 SNP 마커

1 October 2021. pp. 443-450

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Abstract

Peach flesh color is commercially important criteria for classification and has implications for nutritional quality. To breed new yellow-fleshed peach cultivar many cross seedlings and generations should be maintained. Therefore it is necessary to develop early selection molecular markers for screening cross seedlings and germplasm with economically important traits to increase breeding efficiency. For the comparison of transcription profiles in peach varieties with a different flesh color expression, two cDNA libraries were constructed. Differences in gene expression between yellow- fleshed peach cultivar, ‘Changhowon Hwangdo’ and white-fleshed peach cultivar, ‘Mibaekdo’ were analyzed by next- generation sequencing (NGS). Expressed sequence tag (EST) of clones from the two varieties was selected for nucleotide sequence determination and homology searches. Putative single nucleotide polymorphisms (SNPs) were screened from peach EST contigs by high resolution melting (HRM) analysis, SNP ID ppa002847m:cds and ppa002540m:cds displayed specific difference between 17 yellow-fleshed and 21 white-fleshed peach varieties. The SNP markers for distinguishing yellow and white fleshed peach varieties by HRM analysis offers the opportunity to use early selection. This SNP markers could be useful for marker assisted breeding and provide a good reference for relevant research on molecular mechanisms of color variation in peach varieties.

Keywords

Carotenoid

Gene expression

High resolution melting

Varieties

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Information

Publisher :The Plant Resources Society of Korea
Publisher(Ko) :한국자원식물학회
Journal Title :Korean Journal of Plant Resources
Journal Title(Ko) :한국자원식물학회지
Volume : 34
No :5
Pages :443-450
Received Date : 2021-06-22
Revised Date : 2021-09-12
Accepted Date : 2021-09-16
DOI :https://doi.org/10.7732/kjpr.2021.34.5.443

Korean Journal of Plant Resources ISSN:1226-3591(Print) 2287-8203(Online) 한국자원식물학회지

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